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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12414325_12416813_F

Intron Information:

Intron Rank:
146528
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12414325 - 12416813
Intron Length:
2489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
ATCTACAAAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTCTCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
54.7
0.11
1
49.4
37.5
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
69.6
0.7
1.2
80.91
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028950
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039216
12386501 - 12467876
81376