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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12456735_12474352_F

Intron Information:

Intron Rank:
146532
Intron Class:
major
Intron Phase:
Intron Coordinates:
12456735 - 12474352
Intron Length:
17618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CTACTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTCCCTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.3
0.7
0.8
72.9
37.2
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
58.3
0.34
1.9
78.36
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028950
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045627
12386703 - 12474499
87797