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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12509059_12509172_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12509059 - 12509172
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CGTCCTCACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTCACTCAACT
Flanking Amino Acid:
GCISQFFGDYSSFCWEHRPQ
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.7
36.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
67.6
0.4
0.9
61.8
33.8
Minor 5ss
32
-2.1
3.6
48.4
47.3
Minor BPS
53.8
0.2
1.8
70.84
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013388
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013946
12507808 - 12512372
4565