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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12509298_12509440_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12509298 - 12509440
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
ACGTCCCTGACG
Flanking Amino Acid:
RRVAGRAARKRCCVCRKKGA
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
79.2
0.66
0.9
73
37.3
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
53.7
-0
1.8
57.52
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013388
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013946
12507808 - 12512372
4565