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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12509531_12512246_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12509531 - 12512246
Intron Length:
2716

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCAGGGGGA
5'SS Class:
major
3'SS Sequence:
GTTTCCAGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAG
U12 Branch Point Sequence:
CTCTCTTCCAGT
Flanking Amino Acid:
TKENLHPLLDGLYQRGAEGE
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
64.8
36.1
Major BPS
53.4
0.08
1.7
72.5
43.5
Major PPT
67.5
0.39
1
58.9
41.7
Minor 5ss
19.3
-3.5
4.3
31.7
43.3
Minor BPS
44.7
-0.3
2.2
62.98
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013388
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013946
12507808 - 12512372
4565