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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1265815_1267445_R

Intron Information:

Intron Rank:
154341
Intron Class:
major
Intron Phase:
Intron Coordinates:
1265815 - 1267445
Intron Length:
1631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTACGTACA
5'SS Class:
major
3'SS Sequence:
TCCTTTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCATTTGTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
67.3
37.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
76.3
0.59
0.9
72.5
37.7
Minor 5ss
36.8
-1.5
2.9
44.7
37.9
Minor BPS
47.9
-0.1
2
60.32
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030541
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046491
1255387 - 1272086
16700