Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12666600_12682668_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

12666600 - 12682668

Intron Length:

16069

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAGCC

5'SS Class:

major

3'SS Sequence:

TTCTTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCATAAT

U12 Branch Point Sequence:

TTTTTCTTTCTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.63

1.1

66.9

37.4

Major BPS

62.9

0.32

1.2

63.9

38.4

Major PPT

93.2

0.97

0.6

92.2

18.2

Minor 5ss

37.2

-1.4

3.4

51.6

45.1

Minor BPS

-0.2

3.6

83.03

38.5

Associated Gene:

Gene:

ST6GAL1

Ensembl Gene ID:

ENSAPLG00000013571

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022297

12666442 - 12694428

27987