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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12687713_12689157_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12687713 - 12689157
Intron Length:
1445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
ATGTCATTATGT
Flanking Amino Acid:
KTTIRLVNSQKWPGSRAPHS
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.8
43.8
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
88.4
0.86
0.6
84.2
23.7
Minor 5ss
31
-2.2
3.2
40
46.1
Minor BPS
49
0.01
2.1
71.43
45.2

Associated Gene:

Gene:
ST6GAL1
Ensembl Gene ID:
ENSAPLG00000013571
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022297
12666442 - 12694428
27987