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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12691612_12694186_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12691612 - 12694186
Intron Length:
2575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTCCCTCCACA
Flanking Amino Acid:
QPNPPSSGTLGILIMMTLCD
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
71.8
28.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
81.8
0.72
0.7
76.5
25.7
Minor 5ss
31.9
-2.1
3
35
42.5
Minor BPS
59.9
0.31
2
77.44
39.2

Associated Gene:

Gene:
ST6GAL1
Ensembl Gene ID:
ENSAPLG00000013571
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022667
12677864 - 12694669
16806
ENSAPLT00000022297
12666442 - 12694428
27987
ENSAPLT00000014142
12670177 - 12694669
24493