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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12745844_12747172_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12745844 - 12747172
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCCACTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
AGAGGTTTAATC
Flanking Amino Acid:
ANLSEDSEQAGAVPLNITTM
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
80.6
0.69
0.8
72.2
37.7
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
47.9
-0.1
1.8
53.76
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001873
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001867
12745513 - 12748128
2616