Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12819518_12820581_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12819518 - 12820581

Intron Length:

1064

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTAAGAGCC

5'SS Class:

major

3'SS Sequence:

TATTCCCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

CTCTCTTTTATT

Flanking Amino Acid:

YRLKRRSARRRISRREAGNC

Intron Amino Acid Position:

223

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.3

66.9

37.4

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

79.9

0.67

0.8

74.5

30.2

Minor 5ss

33.1

-1.9

3.4

42.4

37.6

Minor BPS

61.9

0.45

1.6

75.01

42.5

Associated Gene:

Gene:

ITM2C

Ensembl Gene ID:

ENSAPLG00000005414

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005595

12818426 - 12834759

16334

ENSAPLT00000026675

12818426 - 12827466

9041