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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12825174_12827061_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12825174 - 12827061
Intron Length:
1888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCATCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTGTCTCCAACC
Flanking Amino Acid:
YVYRYFFITQLPRESVFHCG
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
69.5
41.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
71.7
0.49
0.8
64.8
30.8
Minor 5ss
38.9
-1.2
3.6
54.5
49.7
Minor BPS
49.4
-0
1.9
62.98
42.7

Associated Gene:

Gene:
ITM2C
Ensembl Gene ID:
ENSAPLG00000005414
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005595
12818426 - 12834759
16334