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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12827200_12834681_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12827200 - 12834681
Intron Length:
7482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATGCTCTCATTT
Flanking Amino Acid:
RLAASRLPSWEEQAPAVQSR
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60.4
45.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
87.2
0.84
0.7
81.4
30.6
Minor 5ss
25.8
-2.8
2.9
22.4
37.3
Minor BPS
47.3
-0.1
1.7
63.59
41.1

Associated Gene:

Gene:
ITM2C
Ensembl Gene ID:
ENSAPLG00000005414
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005595
12818426 - 12834759
16334