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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12843643_12844002_R

Intron Information:

Intron Rank:
148583
Intron Class:
major
Intron Phase:
Intron Coordinates:
12843643 - 12844002
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTACA
5'SS Class:
major
3'SS Sequence:
TTCCCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATAATGGTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
75.2
34
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.9
0.58
0.7
69
31.5
Minor 5ss
42.2
-0.9
2.4
52.6
43.9
Minor BPS
41.5
-0.6
2.4
54.5
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027377
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037082
12842746 - 12845098
2353