About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12855724_12859053_R

Intron Information:

Intron Rank:
146032
Intron Class:
major
Intron Phase:
Intron Coordinates:
12855724 - 12859053
Intron Length:
3330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGAG
5'SS Class:
strong_major
3'SS Sequence:
AGTTCTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGCTCAAGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.5
39.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
72.9
0.52
0.9
65.8
35.4
Minor 5ss
31
-2.2
3.3
39.7
46.3
Minor BPS
45
-0.3
2
65.81
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025975
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018177
12852329 - 12859359
7031