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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12866515_12868344_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12866515 - 12868344
Intron Length:
1830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
ATTACACTAAAT
Flanking Amino Acid:
IQFEAFHVFKVFVANPNKTQ
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
49.3
0.03
2
75.31
40.2

Associated Gene:

Gene:
CAB39
Ensembl Gene ID:
ENSAPLG00000005148
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042127
12865941 - 12903923
37983
ENSAPLT00000005341
12866326 - 12898535
32210