Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12869417_12870036_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12869417 - 12870036

Intron Length:

620

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCAAA

5'SS Class:

major

3'SS Sequence:

ATTCTGTGTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TTCTCTTTATTC

Flanking Amino Acid:

AEFLEQHYDRFFSEYEKLLH

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

70.2

37.7

Major BPS

89.7

0.98

0.7

89.9

Major PPT

75.8

0.58

73.3

41.4

Minor 5ss

32.8

-2

2.8

31.2

42.7

Minor BPS

66.2

0.49

1.6

73.5

38.4

Associated Gene:

Gene:

CAB39

Ensembl Gene ID:

ENSAPLG00000005148

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042127

12865941 - 12903923

37983

ENSAPLT00000005341

12866326 - 12898535

32210