Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12870097_12870872_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12870097 - 12870872

Intron Length:

776

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTAC

5'SS Class:

strong_major

3'SS Sequence:

TACTCTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTGTTTTTACTC

Flanking Amino Acid:

IASDAFATFKDLLTRHKLLS

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.88

0.9

80.8

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

85.2

0.79

0.8

79.6

Minor 5ss

39.8

-1.1

2.9

45.2

Minor BPS

60.2

0.3

1.6

68.78

Associated Gene:

Gene:

CAB39

Ensembl Gene ID:

ENSAPLG00000005148

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042127

12865941 - 12903923

37983

ENSAPLT00000005341

12866326 - 12898535

32210