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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12871042_12873867_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12871042 - 12873867
Intron Length:
2826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TGTTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTTTTAAAC
Flanking Amino Acid:
QQNILFMLLKGYESPEIALN
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.9
0.61
1
74.1
39.5
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
69.6
0.59
1.3
74.76
36

Associated Gene:

Gene:
CAB39
Ensembl Gene ID:
ENSAPLG00000005148
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042127
12865941 - 12903923
37983
ENSAPLT00000005341
12866326 - 12898535
32210