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Intron Name: Anas_platyrhynchos_platyrhynchos_9_12885273_12898126_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

12885273 - 12898126

Intron Length:

12854

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTTCTCA

5'SS Class:

weak_major

3'SS Sequence:

CCTCCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TTTGACGTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.8

0.21

1.2

55.2

38.3

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

83.9

0.76

0.7

75.7

32.7

Minor 5ss

46.6

-0.3

2.4

58.3

45.9

Minor BPS

45.5

-0.2

2.4

72.33

Associated Gene:

Gene:

CAB39

Ensembl Gene ID:

ENSAPLG00000005148

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005341

12866326 - 12898535

32210