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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12921282_12921432_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12921282 - 12921432
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TCTCTCTTTATT
Flanking Amino Acid:
ETVVGAFHLDQSKLEKADIL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
76.7
0.6
0.8
77.5
29.7
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
61.3
0.44
1.6
76.71
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005097
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005265
12920500 - 12922751
2252