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Intron Name: Anas_platyrhynchos_platyrhynchos_9_12971615_12972458_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12971615 - 12972458

Intron Length:

844

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAATTCTC

5'SS Class:

major

3'SS Sequence:

TATTTTATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

AATTTCTAAATA

Flanking Amino Acid:

TVMMTYQIPSRDLETVLKED

Intron Amino Acid Position:

1206

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.1

69.4

41.5

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

87.9

0.85

0.8

32.7

Minor 5ss

39.3

-1.2

54.6

42.5

Minor BPS

62.7

0.39

1.6

70.3

36.1

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043454

12968544 - 13004245

35702

ENSAPLT00000004569

12968544 - 13002211

33668