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Intron Name: Anas_platyrhynchos_platyrhynchos_9_12976628_12978054_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12976628 - 12978054

Intron Length:

1427

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTATGGCAA

5'SS Class:

major

3'SS Sequence:

TTTTTTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAT

U12 Branch Point Sequence:

CCATCCTGATGC

Flanking Amino Acid:

DKPKGRPAERGGRGQRNGTS

Intron Amino Acid Position:

796

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

60.2

Major BPS

78.8

0.71

67.6

40.6

Major PPT

94.3

0.5

93.3

15.5

Minor 5ss

36.3

-1.6

3.3

43.3

46.3

Minor BPS

45.1

-0.3

51.61

45.3

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004569

12968544 - 13002211

33668

ENSAPLT00000043454

12968544 - 13004245

35702