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Intron Name: Anas_platyrhynchos_platyrhynchos_9_12980681_12980887_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12980681 - 12980887

Intron Length:

207

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACGC

5'SS Class:

strong_major

3'SS Sequence:

AATCTCTTAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAC

U12 Branch Point Sequence:

AATCTCTTAACA

Flanking Amino Acid:

KLEHKREPFAEKQSGPGAQV

Intron Amino Acid Position:

559

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

69.9

41.1

Major BPS

70.1

0.5

70.3

31.9

Major PPT

0.49

66.5

38.6

Minor 5ss

32.3

-2

3.1

42.6

44.3

Minor BPS

74.5

0.76

1.1

76.55

33.4

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043454

12968544 - 13004245

35702

ENSAPLT00000004569

12968544 - 13002211

33668