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Intron Name: Anas_platyrhynchos_platyrhynchos_9_12980982_12982242_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12980982 - 12982242

Intron Length:

1261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAGGTTTT

5'SS Class:

major

3'SS Sequence:

GACCTGCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTGTTTTTAATG

Flanking Amino Acid:

NNEDTQKDKTIGQDARKVKN

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

1.1

72.9

39.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

70.5

0.46

65.4

40.8

Minor 5ss

46.9

-0.3

3.2

71.8

39.2

Minor BPS

64.2

0.31

1.4

61.75

41.5

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043454

12968544 - 13004245

35702

ENSAPLT00000004569

12968544 - 13002211

33668