Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12982870_12983257_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12982870 - 12983257

Intron Length:

388

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTAAGTCAA

5'SS Class:

major

3'SS Sequence:

TTGGTTTATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

GAGTTTGTAACG

Flanking Amino Acid:

SFIIGRHKVRTGPLNEDVFA

Intron Amino Acid Position:

447

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.3

74.1

38.3

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

78.2

0.64

73.7

40.9

Minor 5ss

34.9

-1.7

2.9

40.4

38.9

Minor BPS

47.7

-0.3

52.27

42.7

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043454

12968544 - 13004245

35702

ENSAPLT00000004569

12968544 - 13002211

33668