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Intron Name: Anas_platyrhynchos_platyrhynchos_9_12984017_12986605_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12984017 - 12986605

Intron Length:

2589

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATTAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

ATTTAATTAAAA

Flanking Amino Acid:

PTCLFQDVDERAVPLLGYLP

Intron Amino Acid Position:

360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.88

0.9

80.8

Major BPS

90.7

1.01

0.7

19.9

Major PPT

87.1

0.84

0.7

80.8

31.2

Minor 5ss

39.8

-1.1

2.9

45.2

Minor BPS

58.3

0.26

1.9

74.02

36.5

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043454

12968544 - 13004245

35702

ENSAPLT00000004569

12968544 - 13002211

33668