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Intron Name: Anas_platyrhynchos_platyrhynchos_9_12986685_12987025_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12986685 - 12987025

Intron Length:

341

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATCCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TACTTTTTAATC

Flanking Amino Acid:

LAEKVHSGYEAPRIPPDKRI

Intron Amino Acid Position:

334

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

74.6

41.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

97.3

1.06

0.5

96.6

11.5

Minor 5ss

43.9

-0.7

3.2

65.5

45.6

Minor BPS

69.8

0.6

1.1

70.36

35.6

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043454

12968544 - 13004245

35702

ENSAPLT00000004569

12968544 - 13002211

33668