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Intron Name: Anas_platyrhynchos_platyrhynchos_9_12988484_12989963_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12988484 - 12989963

Intron Length:

1480

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TTAATGTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TTTGTTATAAAT

Flanking Amino Acid:

LPSWNICNRAESSTQDCMEE

Intron Amino Acid Position:

269

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

36.6

Major BPS

90.7

1.01

0.7

19.9

Major PPT

74.3

0.55

66.1

44.9

Minor 5ss

29.1

-2.4

3.2

37.3

42.5

Minor BPS

54.2

0.21

1.8

77.39

39.2

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043454

12968544 - 13004245

35702

ENSAPLT00000004569

12968544 - 13002211

33668