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Intron Name: Anas_platyrhynchos_platyrhynchos_9_12990166_12991784_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12990166 - 12991784

Intron Length:

1619

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTATG

5'SS Class:

major

3'SS Sequence:

GACTTCTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

GTTTTTTCAACT

Flanking Amino Acid:

ITSEYIMKNADMFAVAVSLI

Intron Amino Acid Position:

202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

71.9

39.5

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

76.1

0.59

0.8

73.6

36.7

Minor 5ss

36.1

-1.6

2.9

48.1

41.6

Minor BPS

69.6

0.69

1.5

84.54

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043454

12968544 - 13004245

35702

ENSAPLT00000004569

12968544 - 13002211

33668