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Intron Name: Anas_platyrhynchos_platyrhynchos_9_12996543_13001615_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

12996543 - 13001615

Intron Length:

5073

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTGAT

5'SS Class:

major

3'SS Sequence:

CCTTCTTCCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TCTTCCTTCCCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

74.7

35.4

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

81.8

0.72

0.7

80.1

25.2

Minor 5ss

37.3

-1.4

3.4

45.5

Minor BPS

47.4

-0.1

3.6

83.33

44.1

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043454

12968544 - 13004245

35702

ENSAPLT00000004569

12968544 - 13002211

33668