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Intron Name: Anas_platyrhynchos_platyrhynchos_9_13001708_13002049_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

13001708 - 13002049

Intron Length:

342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCTGCATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTGAT

U12 Branch Point Sequence:

TCTTTCTGCATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

82.1

Major BPS

0.27

1.3

53.3

44.2

Major PPT

75.5

0.57

0.8

72.2

32.5

Minor 5ss

32.6

-2

3.1

42.1

Minor BPS

51.5

0.04

1.9

67.18

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004569

12968544 - 13002211

33668