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Intron Name: Anas_platyrhynchos_platyrhynchos_9_13002304_13004191_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

13002304 - 13004191

Intron Length:

1888

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TTTATCTACATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAA

U12 Branch Point Sequence:

TCATATTTAACC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

73.6

31.1

Major BPS

79.5

0.73

0.9

36.9

Major PPT

73.8

0.54

0.9

69.8

35.6

Minor 5ss

42.1

-0.9

2.6

53.2

44.1

Minor BPS

67.6

0.53

1.5

72.03

Associated Gene:

Gene:

PER2

Ensembl Gene ID:

ENSAPLG00000004326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043454

12968544 - 13004245

35702