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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13036724_13037902_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13036724 - 13037902
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATAACT
Flanking Amino Acid:
KRKYWWKNCKMMIILGVVCA
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
91.1
0.92
0.6
87.8
22.4
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
71.9
0.76
1.6
90.42
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004255
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004358
13036664 - 13041413
4750