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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13091533_13098365_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13091533 - 13098365
Intron Length:
6833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
ILWKEAGLDLRILPYGCLAT
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
77.3
37.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.1
0.74
0.9
80.5
36.7
Minor 5ss
37.3
-1.4
3.3
52.9
44.1
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
PIK3CB
Ensembl Gene ID:
ENSAPLG00000003554
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003734
13087257 - 13143501
56245