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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13099518_13101938_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13099518 - 13101938
Intron Length:
2421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAACT
5'SS Class:
major
3'SS Sequence:
ATATCACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAGTTTTAAAG
Flanking Amino Acid:
VAHMKVLAKQVEALNKMKTL
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
73.2
35.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.6
0.58
0.9
71.3
39
Minor 5ss
41.6
-0.9
3
58.8
45.4
Minor BPS
51.2
-0.1
1.6
53.99
41

Associated Gene:

Gene:
PIK3CB
Ensembl Gene ID:
ENSAPLG00000003554
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003734
13087257 - 13143501
56245