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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13105267_13107799_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13105267 - 13107799
Intron Length:
2533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAA
Flanking Amino Acid:
KWNKLEDVAQLQALLQIWPK
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.1
0.54
1
71
37.6
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
70.1
0.63
1.3
75.65
35.9

Associated Gene:

Gene:
PIK3CB
Ensembl Gene ID:
ENSAPLG00000003554
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003734
13087257 - 13143501
56245