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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13107989_13108991_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13107989 - 13108991
Intron Length:
1003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTTCTCATTT
Flanking Amino Acid:
ARSSDNAAMAGRGGKKFFVV
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
76.5
39.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.5
0.69
0.8
73
37
Minor 5ss
44.4
-0.6
2.9
62
42.6
Minor BPS
55.4
0.25
1.8
75.31
42.2

Associated Gene:

Gene:
PIK3CB
Ensembl Gene ID:
ENSAPLG00000003554
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003734
13087257 - 13143501
56245