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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13111906_13112376_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13111906 - 13112376
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
YQTIRKAGKVHYPVAWVNTM
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.4
38.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
44
-0.6
2.8
55.2
44.3
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
PIK3CB
Ensembl Gene ID:
ENSAPLG00000003554
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003734
13087257 - 13143501
56245