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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13186513_13190389_R

Intron Information:

Intron Rank:
151158
Intron Class:
major
Intron Phase:
Intron Coordinates:
13186513 - 13190389
Intron Length:
3877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTGG
5'SS Class:
major
3'SS Sequence:
ACTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATCTCTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
64.1
42.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.7
0.76
0.8
80.8
36.2
Minor 5ss
45.8
-0.4
2.5
55
44.5
Minor BPS
66.3
0.59
1.7
82.35
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028837
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021255
13186432 - 13191315
4884