About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13375123_13375604_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13375123 - 13375604
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTATTCTGAACT
Flanking Amino Acid:
PAVFKDEHLVTVFQQDRHED
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.1
35.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72.6
0.51
0.9
69.7
41
Minor 5ss
37.2
-1.5
3.2
44.7
44.3
Minor BPS
69.6
0.69
1.4
81.41
40

Associated Gene:

Gene:
MRPS22
Ensembl Gene ID:
ENSAPLG00000003534
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003596
13375048 - 13377983
2936