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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13375689_13376235_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13375689 - 13376235
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTCTGTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTTCTGTATGT
Flanking Amino Acid:
FEPDSADYIRVHHRTYDDIE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.4
35.1
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
77.7
0.62
0.9
73.9
35.8
Minor 5ss
41.8
-0.9
2.7
47.2
42.3
Minor BPS
48.8
-0
2.4
79.06
43.7

Associated Gene:

Gene:
MRPS22
Ensembl Gene ID:
ENSAPLG00000003534
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003596
13375048 - 13377983
2936