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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13376382_13377523_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13376382 - 13377523
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTATTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTAAATGAATT
Flanking Amino Acid:
GLLIDMIHRDLLDDATSLIT
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
70.9
39.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.1
0.72
0.9
81.4
36.1
Minor 5ss
37
-1.5
3.4
55.1
43.5
Minor BPS
50.2
0.09
1.9
76.48
39.4

Associated Gene:

Gene:
MRPS22
Ensembl Gene ID:
ENSAPLG00000003534
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003596
13375048 - 13377983
2936