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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13379099_13379748_R

Intron Information:

Intron Rank:
152085
Intron Class:
major
Intron Phase:
Intron Coordinates:
13379099 - 13379748
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAGAACTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74
0.54
0.9
74.9
34.5
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
51
0.03
1.7
58.73
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029413
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028632
13378220 - 13379838
1619