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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13384289_13384520_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13384289 - 13384520
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGGACTTTTATT
Flanking Amino Acid:
TRVAHFLEKQGFKQQALAVS
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.9
74.6
38.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.3
0.68
0.8
78.5
34
Minor 5ss
19.4
-3.5
3.9
28.7
43.6
Minor BPS
53.8
0.2
1.7
68.99
42.1

Associated Gene:

Gene:
COPB2
Ensembl Gene ID:
ENSAPLG00000002884
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002977
13382839 - 13395101
12263