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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13384729_13385028_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13384729 - 13385028
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
TTATCCAAGATG
Flanking Amino Acid:
GEIVTIAHLDRTMYLLGYIP
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
48.1
-0.2
2
60.08
42.1

Associated Gene:

Gene:
COPB2
Ensembl Gene ID:
ENSAPLG00000002884
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002977
13382839 - 13395101
12263