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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13387669_13387888_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13387669 - 13387888
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCATTA
5'SS Class:
major
3'SS Sequence:
CTACATTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTCTCCATCT
Flanking Amino Acid:
GYDEGSIIVKLGREEPAMSM
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
68.9
38.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
69.3
0.43
0.9
61.5
39.5
Minor 5ss
46
-0.4
3.1
65.2
46
Minor BPS
51.2
0.12
2.1
80.99
40.7

Associated Gene:

Gene:
COPB2
Ensembl Gene ID:
ENSAPLG00000002884
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002977
13382839 - 13395101
12263