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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13388267_13389352_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13388267 - 13389352
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGACTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGTTTATTAACT
Flanking Amino Acid:
DRLVKIWDYQNKTCVQTLEG
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
82
0.72
0.9
76.7
37.2
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
75
0.86
1.5
89.88
33.6

Associated Gene:

Gene:
COPB2
Ensembl Gene ID:
ENSAPLG00000002884
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002977
13382839 - 13395101
12263