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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13390509_13391474_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13390509 - 13391474
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
AATACGTTAAAC
Flanking Amino Acid:
PTQPFILTSSDDMLIKLWDW
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
77.2
37.6
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
38
-1.3
3.3
54.4
43.7
Minor BPS
50
-0
2.2
64.52
40.3

Associated Gene:

Gene:
COPB2
Ensembl Gene ID:
ENSAPLG00000002884
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002977
13382839 - 13395101
12263