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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13393646_13394288_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13393646 - 13394288
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGACT
5'SS Class:
major
3'SS Sequence:
TTATTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
SVCVWNHETQTLVKTFEVCD
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
74.1
35.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.6
0.73
0.8
81.4
36.1
Minor 5ss
29.5
-2.3
3.1
41
45
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
COPB2
Ensembl Gene ID:
ENSAPLG00000002884
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002977
13382839 - 13395101
12263